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Bioinformatics
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J Vandel and S de Givry
A New Local Move Operator for Reconstructing Gene Regulatory
networks
In CP-11 workshop on Constraint Based Methods for
Bioinformatics, pages 67-72, Perugia, Italy, 2011
- 3
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B. Servin, S. de Givry, and T. Faraut
Statistical confidence measures for genome maps: application to the
validation of genome assemblies
Bioinformatics, 26(24):3035-3042, 2010
- 4
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J Vandel, B Mangin, M Vignes, and S de Givry
Extended bayesian scores for reconstructing gene regulatory networks
In ECCS-10 workshop on graphical models for reasoning on
biological systems: computational challenges, Lisbon, Portugal, 2010
- 5
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A. Favier, J-M. Elsen, S. de Givry, and A. Legarra
Optimal haplotype reconstruction in half-sib families
In ICLP-10 workshop on Constraint Based Methods for
Bioinformatics, Edinburgh, UK, 2010
- 6
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A. Favier, J-M. Elsen, S. de Givry, and A. Legarra
Exact Haplotype Reconstruction in Half-Sib Families with Dense
Marker Maps
In 9th World Congress on Genetics Applied to Livestock
Production (WCGALP-10), Leipzig, Germany, 2010
- 7
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B Servin, S de Givry, and Faraut T
Modelling radiation hybrid maps uncertainty and application to the
validation of whole genome assemblies
In 9th World Congress on Genetics Applied to Livestock
Production (WCGALP-10), Leipzig, Germany, 2010
- 8
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T Faraut, S de Givry, C Hitte, Y Lahbib-Mansais, M Morisson, D Milan, T Schiex,
B Servin, A Vignal, F Galibert, and M Yerle
Contribution of Radiation Hybrids to Genome Mapping in Domestic
Animals
Cytogenetic and Genome Research, 126:21-33, 2009
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D Allouche, S de Givry, M Sanchez, and T Schiex
TagSNP selection using Weighted CSP and Russian Doll Search with
Tree Decomposition
In CP-09 workshop on Constraint Based Methods for
Bioinformatics, Lisbon, Portugal, 2009
- 10
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M. Sánchez, S. de Givry, and T. Schiex
Mendelian error detection in complex pedigrees using weighted
constraint satisfaction techniques
Constraints, 13(1):130-154, 2008
- 11
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Elisa Marques, Simon De Givry, Paul Stothard, Brenda Murdoch, Zhiquan Wang,
James Womack, and Stephen Moore
A high resolution radiation hybrid map of bovine chromosome 14
identifies scaffold rearrangement in the latest bovine assembly
BMC Genomics, (8):254, 2007
- 12
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T. Faraut, S. de Givry, P. Chabrier, T. Derrien, F. Galibert, C. Hitte, and
T. Schiex
A comparative genome approach to marker ordering
Bioinformatics, 23(2):50-56, 2007
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T. Faraut, S. de Givry, P. Chabrier, T. Derrien, F. Galibert, C. Hitte, and
T. Schiex
A comparative genome approach to marker ordering
In Proc. of ECCB-06, page 7p., Eilat, Israel, 2007
- 14
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P. Thébault, S. de Givry, T. Schiex, and C. Gaspin
Searching RNA motifs and their intermolecular contacts with
constraint networks
Bioinformatics, 22(17):2074-2080, 2006
- 15
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S. de Givry, Z. Vitezica, I. Palhiere, and T. Schiex
Mendelsoft: Mendelian error detection in complex pedigree using
weighted constraint satisfaction techniques
In 8th World Congress on Genetics Applied to Livestock
Production, page 2p., Belo Horizonte, Brazil, 2006
- 16
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S. de Givry, I. Palhiere, Z. Vitezica, and T. Schiex
Mendelian error detection in complex pedigree using weighted
constraint satisfaction techniques
In ICLP-05 workshop on Constraint Based Methods for
Bioinformatics, page 9p., Sitges, Spain, 2005
- 17
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Patricia Thébault, Simon de Givry, Thomas Schiex, and Christine Gaspin
Combining constraint processing and pattern matching to describe and
locate structured motifs in genomic sequences
In Fifth IJCAI-05 Workshop on Modelling and Solving Problems
with Constraints, page 8p., Edindurgh, Scotland, 2005
- 18
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S. de Givry, M. Bouchez, P. Chabrier, D. Milan, and T. Schiex
CARTHAGENE: multipopulation integrated genetic and radiated hybrid
mapping
Bioinformatics, 21(8):1703-1704, 2005
- 19
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S. de Givry, T. Faraut, and T. Schiex
Experiments in an algorithmic approach to comparative radiation
hybrid mapping
Poster at the International Multidisciplinary Meeting on
Post-Genomics, IPG'04, Lyon, France, October 2004
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In French:
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J. Vandel, S. de Givry, B. Mangin, and M. Vignes
Reconstruction de réseau de régulation de gène à l'aide de données
génomiques et de données génétiques
In Proc. of CAP-10, 2010
- 22
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D. Allouche, S. de Givry, and T. Schiex
Sélection de tagSNP : une approche PLNE
In Proc. of ROADEF-10, Toulouse, France, 2010
- 23
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J. Vandel and S. de Givry
Inférence de réseaux de régulation de gènes à partir de
données d'expression et de polymorphisme
In JOBIM-09 workshop sur Modèles graphiques probabilistes pour
l'intégration de données hétérogènes et la découverte de modèles causaux en
biologie, Nantes, France, 2009
- 24
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B. Servin, S. de Givry, and T. Faraut
Modélisation de l'incertitude des cartes comparées et application à
l'étude des assemblages génomiques
In Séminaire Génétique Animale, Lacanau, France, 2008
- 25
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T. Faraut, S. de Givry, P. Chabrier, T. Derrien, F. Galibert, C. Hitte, and
T. Schiex
A comparative genome approach to marker ordering
In Proc. of JOBIM-06, page 11p., Bordeaux, France, 2006
- 26
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P. Chabrier, C. Gaspin, S. de Givry, and T. Schiex
Application des techniques du voyageur de commerce à la production
de cartes génétiques
In Proc. of ROADEF-03, pages 74-76, Avignon, France, 2003
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Valued Constraint Satisfaction Problems
- 28
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M Akplogan, J Dury, S de Givry, G Quesnel, A Joannon, A Reynaud, J-E Bergez,
and F Garcia
A weighted csp approach for solving spatio-temporal planning problem
in farming systems
In Proc. of the Soft'2011 workshop, pages 1-15, Perugia,
Italy, 2011
- 29
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D Allouche, C Bessiere, P Boizumault, S de Givry, P Gutierrez, S Loudni,
JP Métivier, and T Schiex
Decomposing global cost functions
In Proc. of the Soft'2011 workshop, pages 16-30, Perugia,
Italy, 2011
- 30
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A Favier, S de Givry, A Legarra, and T Schiex
Pairwise decomposition for combinatorial optimization in graphical
models
In Proc. of IJCAI-11, Barcelona, Spain, 2011
- 31
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A. Favier, S. de Givry, and P. Jégou
Solution counting for CSP and SAT with large tree-width
Control Systems and Computers, (2):4-13, 2011
- 32
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D. Allouche, S. de Givry, and T. Schiex
Towards parallel non serial dynamic programming for solving hard
weighted csp
In Proc. of CP-10, St Andrews, Scotland, 2010
- 33
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D. Allouche, S. de Givry, and T. Schiex
Toulbar2, an open source exact cost function network solver
Technical report, INRA, 2010
Contributors: M. Sanchez (SP), S. Bouveret (F), H. Fargier (F), F
Heras (SP), P. Jégou (F), J. Larrosa (SP), K. L. Leung (CN), S. N'diaye (F),
E. Rollon (SP), C. Terrioux (F), G. Verfaillie (F), M. Zytnicki
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M. Cooper, S. de Givry, M. Sanchez, T. Schiex, M. Zytnicki, and T. Werner
Soft arc consistency revisited
Artificial Intelligence, 174(7-8):449-478, 2010
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A. Favier, S. de Givry, and P. Jégou
Exploiting problem structure for solution counting
In Proc. of CP-09, pages 335-343, Lisbon, Portugal, 2009
- 36
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M. Zytnicki, C. Gaspin, S. de Givry, and T. Schiex
Bounds Arc Consistency for Weighted CSPs
Journal of Artificial Intelligence Research, 35:593-621, 2009
- 37
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R. Marinescu, R. Dechter, S. de Givry, and T. Schiex
Combinatorial optimization for graphical models
IJCAI-09 tutorial, July 2009
http://www.inra.fr/mia/T/degivry/tutorial_optimization_ijcai09.ppt
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M Sanchez, D Allouche, S de Givry, and T Schiex
Russian doll search with tree decomposition
In Proc. of IJCAI'09, Pasadena (CA), USA, 2009
http://www.inra.fr/mia/T/degivry/rdsbtd_ijcai09_sdg.ppt
- 39
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M. Sanchez, D. Allouche, S. de Givry, and T. Schiex
Russian doll search with tree decomposition
In Workshop on Preferences and Soft Constraints,
Sydney,Australia, 2008
- 40
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M. Sanchez, S. Bouveret, S. de Givry, F. Heras, P. Jégou, J. Larrosa,
S. Ndiaye, E. Rollon, T. Schiex, C. Terrioux, G. Verfaillie, and M. Zytnicki
Max-csp competition 2008: toulbar2 solver description
In Proceedings of the Third International CSP Solver
Competition, 2008
- 41
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M. Cooper, S. de Givry, M. Sanchez, T. Schiex, and M. Zytnicki
Virtual arc consistency for weighted csp
In Proc. of AAAI-08, Chicago, IL, 2008
- 42
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S. Bouveret, S. de Givry, F. Heras, J. Larrosa, E. Rollon, M. Sanchez,
T. Schiex, G. Verfaillie, and M. M. Zytnicki
Max-csp competition 2007: toolbar/toulbar2 solver brief description
In M.R.C. van Dongen, Christophe Lecoutre, and Olivier Roussel,
editors, Proceedings of the Second International CSP Solver
Competition, pages 19-21, 2008
- 43
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J. Larrosa, F. Heras, and S. de Givry
A logical approach to efficient max-sat solving
Artificial Intelligence, 172(2-3):204-233, 2008
- 44
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M. Cooper, S. de Givry, and T. Schiex
Optimal soft arc consistency
In Proc. of IJCAI-07, pages 68-73, Hyderabad, India, 2007
- 45
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M. Cooper, S. de Givry, and T. Schiex
The quest for the best arc consistent closure in weighted csp
In 8th International CP-06 Workshop on Preferences and Soft
Constraints, page 14p., Nantes, France, 2006
- 46
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S. de Givry, T. Schiex, and G. Verfaillie
Exploiting Tree Decomposition and Soft Local Consistency in
Weighted CSP
In Proc. of AAAI-06, Boston, MA, 2006
- 47
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Simon de Givry, Thomas Schiex, and Gérard Verfaillie
Combining tree decomposition and local consistency in max-csps
In 7th International CP-05 Workshop on Preferences and Soft
Constraints, page 15p., Sitges,Spain, 2005
- 48
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S. de Givry, M. Zytnicki, F. Heras, and J. Larrosa
Existential arc consistency: Getting closer to full arc consistency
in weighted CSPs
In Proc. of IJCAI-05, pages 84-89, Edinburgh, Scotland, 2005
- 49
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S. Bouveret, F. Heras, S.de Givry, J. Larrosa, M. Sanchez, and T. Schiex
Toolbar: a state-of-the-art platform for wcsp
http://www.inra.fr/mia/T/degivry/ToolBar.pdf, 2004
- 50
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S. de Givry
Singleton consistency and dominance for weighted csp
In Proc. of 6th International CP-2004 Workshop on Preferences
and Soft Constraints, page 15p., Toronto, Canada, 2004
- 51
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S. de Givry, J. Larrosa, P. Meseguer, and T. Schiex
Solving max-sat as weighted csp
In Proc. of CP-03, pages 363-376, Kinsale, Ireland, 2003
- 52
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B. Cabon, S. de Givry, L. Lobjois, T. Schiex, and J.P. Warners
Radio Link Frequency Assignment
Constraints, 4(1):79-89, 1999
- 53
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B. Cabon, S. de Givry, and G. Verfaillie
Anytime Lower Bounds for Constraint Optimization Problems
In Proc. of CP-98, pages 117-131, Pisa, Italy, 1998
- 54
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S. de Givry, G. Verfaillie, and T. Schiex
Bounding the Optimum of Constraint Optimization Problems
In Proc. of CP-97, pages 405-419, Schloss Hagenberg, Austria,
October 29 - November 1 1997
- 55
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Gérard Verfaillie and Simon de Givry
Algorithmic problems and solutions in the valued constraint
satisfaction problem framework
In Proc. of the Fifth European Congress on Fuzzy and
Intelligent Technologies (EUFIT-97), Aachen, Germany, 1997
- 56
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S. de Givry and G. Verfaillie
Optimum Anytime Bounding for Constraint Optimization
Problems
In Proc. of the AAAI97 workshop on "Building Resource-Bounded
Reasoning Systems", Providence, RI, July 27 1997
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In French:
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A Favier, S de Givry, A Legarra, and T Schiex
Décomposition par paire pour l'optimisation combinatoire dans les
modèles graphiques
In Proc. of JFPC-11, Lyon, France, 2011
- 59
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S de Givry
Optimisation combinatoire dans les réseaux de fonctions de coût
Habilitation à dirigé des recherches, UPS, Toulouse, March 29,
2011
http://www.inra.fr/mia/T/degivry/Givry11a_pres.pdf
- 60
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A. Favier, S. de Givry, and P. Jégou
Comptage de solutions en exploitant la structure du graphe de
contraintes
In Actes des Cinquièmes Journées Francophones de Programmation
par Contraintes, Orléans, 2009
- 61
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M Sanchez, D Allouche, S de Givry, and T Schiex
Algorithme des poupées russes exploitant une décomposition
arborescente
In Yves Deville, editor, Actes des Cinquièmes Journées
Francophones de Programmation par Contraintes, Orléans, 2009
- 62
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M. Cooper, S. de Givry, M. Sanchez, T. Schiex, and M. Zytnicki
Cohérence d'arc virtuelle pour les csp pondérés
In Proc. of JFPC-08, Nantes, France, 2008
- 63
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S. de Givry, T. Schiex, and G. Verfaillie
Décomposition arborescente et cohérence locale souple dans les
csp pondérés
In Proc. of JFPC-06, page 10p., Nîmes, France, 2006
- 64
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M. Zytnicki, F. Heras, S. de Givry, and J. Larrosa
Cohérence d'arc existentielle: un pas de plus vers la cohérence
d'arc complète
In Proc. of JFPC-05, pages 139-148, Lens, France, 2005
- 65
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Simon de Givry
Minorants de problèmes de minimisation de violation de
contraintes : recherche de bonnes relaxations à l'aide de méthodes
incomplètes
In Proc. of JNPC-99, Lyon, France, 1999
- 66
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Simon de Givry
Algorithmes d'optimisation sous contraintes étudiés dans un
cadre temps réel
PhD thesis, École Nationale Supérieure de
l'Aéronautique et de l'Espace, Toulouse, France, 1998
- 67
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Simon de Givry and Gérard Verfaillie
Problèmes d'optimisation sous contraintes : Encadrement anytime de l'optimum
In Proc. of JNPC-97, pages 33-39, Rennes, France, 21-22 avril
1997
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Constraint Programming
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S. de Givry and L. Jeannin
A unified framework for partial and hybrid search methods in
constraint programming
Computer & Operations Research, 33(10):2805-2833, 2006
- 70
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L. Jeannin and S. de Givry
Network planning with constraint programming (short paper)
In Proc. of International Network Optimization Conference,
Evry/Paris, France, October 27-29 2003
- 71
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S. de Givry and L. Jeannin
ToOLS: A library for partial and hybrid search methods
In Proc. of CP-AI-OR'2003, pages 124-138, Montréal, Canada,
2003
- 72
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S. de Givry, L. Jeannin, F. Josset, J. Mattioli, N. Museux, and P. Savéant
The THALES constraint programming framework for hard and soft
real-time applications
The PLANET Newsletter, Issue 5 ISSN 1610-0212, pages 5-7, December
2002
http://planet.dfki.de/service/Resources/Rome/degivry.pdf (slides)
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S. de Givry, P. Gérard, L. Jeannin, J. Mattioli, N. Museux, and P. Savéant
A constraint optimization framework for real-time applications
In Proc. of AIPS-2002 Workshop on On-line Planning and
Scheduling, Toulouse, France, 2002
- 74
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J. Mattioli, N. Museux, J. Jourdan, P. Savéant, and S. de Givry
A constraint optimization framework for mapping a digital signal
processing application onto a parallel architecture
In Proc. of CP-01, pages 701-715, Paphos, Cyprus, 2001
- 75
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S. de Givry and J. Mattioli
Proc. of CP-2001 workshop on on-line combinatorial problem solving
and constraint programming (OLCP'01)
Paphos, Cyprus, 2001
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S. de Givry, Y. Hamadi, J. Mattioli, P. Gérard, M. Lemaître,
G. Verfaillie, A. Aggoun, I. Gouachi, T. Benoist, E. Bourreau, F. Laburthe,
P. David, S. Loudni, and S. Bourgault
Towards an on-line optimisation framework
In CP-2001 Workshop on On-Line combinatorial problem solving and
ConstraintProgramming (OLCP'01), pages 45-61, Paphos, Cyprus, December 1
2001
- 77
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S. de Givry, P. Gérard, J. Jourdan, J. Mattioli, N. Museux, and P. Savéant
How does constraint technology meet industrial constraints?
In Proc. of ESA workshop on On-Board Autonomy, pages 189-200,
Noordwijk, The Netherlands, 2001
- 78
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S. de Givry, G. Verfaillie, and D. Lesaint
On-line scheduling roadmap
Chapter in the PLANET Roadmap on AI Planning and Scheduling, 2001
http://planet.dfki.de/service/Resources/Roadmap/Roadmap.pdf
http://planet.dfki.de/service/Resources/Marseille/SimonDeGivry/index.html
(slides)
http://www.informatik.uni-ulm.de/ki/Planet/TCU-olps/
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Jean Jourdan, Simon de Givry, and Pierre Savéant
Designing limited search algorithms for time constrained
combinatorial optimization problems
Technical report, Thales Research & Development, 1999
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In French:
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S. de Givry and L. Jeannin
Modélisation et résolution en programmation par contraintes
Gestion des prises de vue réalisées par un satellite agile
d'observation de la Terre. 3ème challenge ROADEF, Avignon, France, 2003
- 82
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L. Jeannin and S. de Givry
Optimisation des évolutions d'un réseau télécoms
In Proc. of JFPLC-03, pages 183-186, Amiens, France, 2003
- 83
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L. Jeannin and S. de Givry
Aide à la conception de réseaux télécoms
In Proc. of ROADEF-03, pages 369-370, Avignon, France, 2003
- 84
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S. de Givry and Y. Hamadi
Procédé d'aide à la conception d'algorithmes d'optimisation
prenant en compte une limite de temps
Brevet THALES numéro 0115193, 2001
- 85
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Simon de Givry, Pierre Savéant, and Jean Jourdan
Optimisation combinatoire en temps limité : Depth first branch and
bound adaptatif
In Proc. of JFPLC-99, pages 161-178, Lyon, France, 1999
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Intelligent real-time systems
- 87
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Martin Adelantado and Simon de Givry
Reactive/Anytime Agents: Towards Intelligent Agents with
Real-Time Performance
In IJCAI'95 Workshop on Anytime Algorithms and Deliberation
Scheduling, Montreal, Canada, August 21-25 1995
- 88
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Martin Adelantado, Frédéric Boniol, and Simon de Givry
Saturne: a reactive - anytime programming model for intelligent
embedded real-time systems
In 3rd IEEE Workshop on Parallel and Distributed Real-Time
Systems, Santa Barbara, California, April 24-26 1995
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In French:
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Martin Adelantado, Frédéric Boniol, Augusto Burgueno, Simon de Givry, and
Florence Pagani
Un modèle de systèmes hybrides pour le contrôle de processus
temps-réel interrogeables
In Journées Formalisation des Activités Concurrentes,
Université Paul Sabatier-IRIT, Toulouse, France, 7-8 février 1996
Simon de Givry
2011-11-04