tRNA & aminoacyl-tRNA synthetase table | taaRSAt home page
| Gene | cDNA | Protein | |
|---|---|---|---|
| Database accessions | AC008030 | AJ002062 | O23627 |
| FASTA format files | gene | cDNA | putative cytosolic peptide putative mitochondrial peptide |
Many eubacterial GlyRSs are ab heterodimers. For these enzymes, in the tree below the two chains were fused before alignment.
An unnrooted tree from this multiple alignment generated by Clustal X. Clustal X uses a Neighbour Joining algorithm. Terminal branches and branches which occur in 100% of bootstrap repetitions are in black lines and the other less well supported branches in various shades of grey. Plant sequences are indicated in green, other eukaryotic sequences in blue, eubacterial sequences in red and archaebacterial sequences in magenta. Most sequences were obtained from Swissprot.
Our prediction: cytosolic or mitochondrial depending on the AUG used to initiate translation
PSORT prediction:
Long peptide: mitochondrial matrix space --- Certainty= 0.757 (see full report)
Short peptide: chloroplast stroma --- Certainty= 0.551 (see full report)
MitoProt II prediction:
Long peptide: Mitochondrial p(DFM) = 0.91480 (see full report)
Short peptide: PROBABILITY of export to mitochondria: 0.6224 (see full report)
ChloroP predictions:
Long peptide: not chloroplast (see full report)
Short peptide: not chloroplast (see full report)
Duchene A-M, Dietrich A
(1997)
Isolation and characterization of a glycyl-tRNA synthetase sequence from Arabidopsis thaliana (Accession No. AJ002062).
Plant Physiol. 1997 115: 1730
tRNA & aminoacyl-tRNA synthetase table | taaRSAt home page
Last updated December 31, 1998; Ian Small