tRNA & aminoacyl-tRNA synthetase table | taaRSAt home page
| codons | read by: | codon usage |
|---|---|---|
| AAA | anticodon UUU | 31.0 |
| AAG | anticodon CUU | 32.6 |
Codon usage statistics are from the Codon Usage Database at the Kazusa DNA Research Institute.
In the sequences below, several regions of interest have been marked, including the low stability regions (TATA-like sequences) in the 5'-flanks thought to be important for high transcriptional activity, the CAA triplets thought to indicate the region of transcription initiation and the poly(T) stretches thought to act as transcription terminators. Bases which vary between isoacceptors are highlighted, as are anticodons.
| 5' flanks |
|---|
| Lys(CTT)_1 Lys(CTT)_11 |
| TACCTACAGTTATAGACTATCTAACAATTAACAGTTAAGCTAAGCACAAA |
| Lys(CTT)_10 |
| TGTAAAATATATGTGGAGAATATCTAGTAGATTGAAAGTTAAATCAAAAA |
| Lys(CTT)_12 Lys(CTT)_4 |
| TAGGTTAACGGTAATATTATATACTGGTTGTCTAACTTACAAATCACCAA |
| Lys(CTT)_13 Lys(CTT)_15 |
| TGGGGATAGTTTACATTATTTATATAGTTCTGCTGGAAAATTAACAACAA |
| Lys(CTT)_14 |
| GGAATGTCTGTTGAATTTAGGTATTTACAAGTATAAATTCAAACATCTAA |
| Lys(CTT)_16 |
| TGTAAAATATATGTGGAGAACATCATGTAGATTGAAAGTTAAATCAAAAA |
| Lys(CTT)_2 |
| GATGTGTTTTTTTTATATGAGTATAACAATAGTGTGAATATAGTCAACAA |
| Lys(CTT)_3 |
| AGAAATAATATTTACTGTTATATAGTTTTTCTGGTATCATTAGTCACAAA |
| Lys(CTT)_5 Lys(CTT)_6 |
| TTTGCCGTATACAAAGATTATTACCATTATTATCGACATCACAGAATGTA |
| Lys(CTT)_7 |
| AGTATTAAGTTAAGTTAAGTATAACTTAAGTATCTAACGTTAACAACAAG |
| Lys(CTT)_9 |
| ACATCTGTTAATTGGGATCAAACTGTTAAGTAACTTAGTTGGGCAACAAA |
G
G-C
C-G
C-G
C-G
G*T
T*G
C-G CG
TGA T CACCC A
T CTCGA ||||| G
G |||| GTGGG C
G GAGC C TT
TA G T T
C-G GG
A-T
A-T
G-C
G-C
C A
T A
CTT
| 3' flanks |
|---|
| Lys(CTT)_1 Lys(CTT)_11 |
| ATAATTTCACTTTTCATTTTTGTTC |
| Lys(CTT)_10 Lys(CTT)_16 |
| TTATTCTTTTCATTTTTCTAAAACC |
| Lys(CTT)_12 Lys(CTT)_4 |
| ATTTCTTTTTGGTCTCCCTTTTTTA |
| Lys(CTT)_13 Lys(CTT)_15 |
| TGAAATTACATTTTATTTTTGTACC |
| Lys(CTT)_14 |
| CATTAATTTTTGGCAGTTCTCTTAT |
| Lys(CTT)_2 |
| ATGCAACTTTTTGAAAGCATGCTGT |
| Lys(CTT)_3 |
| CTTTGTTTTTGTTTTTTTAATCCAA |
| Lys(CTT)_5 |
| ATAGTGTTTTTTCTGTTGTTTTTGT |
| Lys(CTT)_6 |
| ATAGTGTTTTTGGGTTCGAACACCA |
| Lys(CTT)_7 |
| TTTCTTTTCCTTTTTGTTGCATTTG |
| Lys(CTT)_9 |
| ACGTTGTTTTTTTTATCATATGTTT |
none
Lys(CTT)_13 Lys(CTT)_15
G43->C
Lys(CTT)_14
G59->A
Lys(CTT)_16
C48->G G49->C
| 5' flanks |
|---|
| Lys(TTT)_1 |
| ATCTGCAAAAACATACAATAATTAACATAATTTAAATTTTTTGTCATATA |
| Lys(TTT)_10 |
| GCGGATTAAAATTAAGTTTAATAATTAATTACGAAATGTTGTATCAGCTC |
| Lys(TTT)_11 |
| TATGAATAATATATGTCAATTAAATAATCAAGTGCTCAGTAATCAACAAA |
| Lys(TTT)_12 |
| GGGTATATTATTTTGAGATAAAATTTTAAACTTTACATAATAAGCACCAA |
| Lys(TTT)_13 |
| GATATCTATTAAGTAATATATTGAAGTTAGAAGAGAACATAAGCATCAAA |
| Lys(TTT)_2 Lys(TTT)_3 Lys(TTT)_4 |
| ATAATGAGTTTATAGGATTGATTTTCGATAACTTTATGAAAGTAATCAAA |
| Lys(TTT)_5 |
| TTATGAATATAACTTGAAACATTTATTAAAATAAGAATAGATAACATGAA |
| Lys(TTT)_6 |
| AATACAATAAACCTTGTTAAATATAGTTTAACGAAAGTGATAAACAAATA |
| Lys(TTT)_7 |
| TTATGGTGTAAAATAGTTTTATAATCAAATCCATTTCAACTATCAAAATT |
| Lys(TTT)_8 |
| AAAAAGACAGGCGTATATAAAAGAGACTAATCAATCAATTAGTCATCGAA |
| Lys(TTT)_9 |
| TATCTGATTAGGTTATGCTTTGAATGTTATTATGATTTAATTATTGTTCA |
G
G-C
C-G
C-G
G-C
T-A
C-G
T-A CT
GA T CACCC A
T CTCGA ||||| G
G |||| GTGGG C
G GAGC C TT
TA G T C
C-G GG
G-C
T-A
G-C
G-C
C A
T A
TTT
| 3' flanks |
|---|
| Lys(TTT)_1 |
| GTAGTATATTTTTTTTGTTAACTCC |
| Lys(TTT)_10 |
| ATTTGTTTTATGTTTTTTGATAATT |
| Lys(TTT)_11 |
| ATTCTATTGAGTACATTCAGTTTTG |
| Lys(TTT)_12 |
| CATATATTTCCTAAATTTTTGTCGA |
| Lys(TTT)_13 |
| ATTTATTTTTTATTTTTTTCCTTCT |
| Lys(TTT)_2 Lys(TTT)_3 Lys(TTT)_4 |
| ATCATGGTAATTTGTCCAAACAAAT |
| Lys(TTT)_5 |
| TTTAGAGCTTTTTTTTTATTTATTG |
| Lys(TTT)_6 |
| TAGCTCTTTGATTTTGTTATAGTTA |
| Lys(TTT)_7 |
| TCGCTTTGAGGTCATTTTTTTTTTA |
| Lys(TTT)_8 |
| AAGTAGTTAATTTTATATTTGATGC |
| Lys(TTT)_9 |
| TTTTGATTTGTTTTTAAAATATATA |
none
Lys(TTT)_1
A38->C T44->A
Lys(TTT)_12
G4->T C47->T
Chen Z, et al.
Nonsense and missense translational suppression in plant cells mediated by tRNALys.
Plant Mol Biol. 1998 Jan;36(1):163-70.
tRNA & aminoacyl-tRNA synthetase table | taaRSAt home page
Last updated December 12, 1999; Ian Small