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The V.A.S.T lab

Variation and Abiotic Stress Tolerance

 

     
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              Here is a list of our publications since 2002.

 

  Cubillos F.A., Yansouni J., Khalili H., Balzergue S., Elftieh S., Martin-Magniette M.L., Serrand Y., Lepiniec L., Baud S.,

  Dubreucq B., Renou J.P., Camilleri C., Loudet O. (2012)

  Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures.

  BMC Genomics  13: 117   Supp. Text&Figures   /   Supp. Tables   /   The QTL Store

    

 

 

  Routaboul J.M., Dubos C., Beck G., Marquis C., Bidzinski P., Loudet O., Lepiniec L. (2012)

  Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis.

  Journal of Experimental Botany  (In Press)   Supp. Data

    

 

 

  Bouteillé M., Rolland G., Balsera C., Loudet O., Muller B. (2012)

  Disentangling the intertwined genetic bases of root and shoot growth in Arabidopsis.

  PLoS ONE  7, e32319   Paper eLink

    

 

 

  Durand S., Bouché N., Perez Strand E., Loudet O., Camilleri C. (2012)

  Rapid establishment of genetic incompatibility through natural duplication-mediated epigenetic variation.

  Current Biology  22: 326-331   Supp. Data

    

 

 

  Cubillos F.A., Coustham V., Loudet O. (2012)

  Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants.

  Current Opinion in Plant Biology  15: 192-198

    

 

 

  Simon M., Simon A., Martins F., Botran L., Tisné S., Granier F., Loudet O., Camilleri C. (2011)

  DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions.

  The Plant Journal  69: 1094-1101   Supp. Fig.  /   Supp. Tab.   /   Cluster   /   ANATool

    

 

 

  Trontin C., Tisné S., Bach L., Loudet O. (2011)

  What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants?

  Current Opinion in Plant Biology  14: 225-231

    

 

 

  Lefebvre V., Fortabat M-N., Ducamp A., North H.M., Maia-Grondard A., Trouverie J., Boursiac Y., Mouille G., Durand-Tardif M. (2011)

  ESKIMO1 disruption in Arabidopsis alters vascular tissue and impairs water transport.

  PLoS ONE  6(2): e16645   Paper eLink

    

 

 

  Vlad D., Rappaport F., Simon M., Loudet O. (2010)

  Gene transposition causing natural variation for growth in Arabidopsis thaliana.

  PLoS Genetics  6(5): e1000945   Paper eLink  /  Supp. Fig.  /  Supp. Tab.

    

 

 

  Kronholm I., Loudet O., de Meaux J. (2010)

  Influence of mutation rate on estimators of genetic differentiation - lessons from Arabidopsis thaliana.

  BMC Genetics  11:33

    

 

 

  Platt A., Horton M., Huang Y.S., Li Y., Anastasio A.E., Wayan Mulyati N., Ågren J., Bossdorf O., Byers D., Donohue K., Dunning M., Holub E.B.,

  Hudson A., Le Corre V., Loudet O., Roux F., Warthmann N., Weigel D., Rivero L., Scholl R., Nordborg M., Bergelson J., Borevitz J.O. (2010)

  The scale of population structure in Arabidopsis thaliana

  PLoS Genetics  6(2): e1000843   Paper eLink

    

 

 

  Bikard D., Patel D., Le Metté C., Giorgi V., Camilleri C., Bennett M.J., Loudet O. (2009)

  Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana

  Science  323: 623-626    Supp. Data  /  High Res. Figures  /  Free Full Text

    

 

 

  Balasubramanian S., Schwartz C., Singh A., Warthmann N., Kim M.C., Maloof J.N., Loudet O., Trainer G.T., Dabi T., Borevitz J.O., Chory J., Weigel D. (2009)

  QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines.

  PLoS ONE  4(2): e4318   Paper eLink

    

 

 

  Bouchabke O., Quashie M-L., Seoane-Redondo J., Fortabat M-N., Gery C., Yu A., Linderme D., Trouverie J., Granier F., Téoulé E. , Durand-Tardif. M. (2008)

  Eskimo1 is a key gene involved in water economy as well as cold acclimation and salt tolerance

  BMC Plant Biology  8: 125    Supp. Data

    

 

 

  Loudet O., Michael T.P., Burger B.T., Le Metté C., Mockler T.C., Weigel D., Chory J. (2008)

  A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana

  Proc. Natl. Acad. Sci. USA (PNAS)  105: 17193-17198   PNAS Supp. Data  /  Supplementary Tables

    

 

 

  Simon M., Loudet O., Durand S., Bérard A., Brunel D., Sennesal F.-X., Durand-Tardif M., Pelletier G., Camilleri C. (2008)

  QTL mapping in five new large RIL populations of Arabidopsis thaliana genotyped with consensus SNP markers.

  Genetics  178: 2253-2264   Supp. Data

    

 

 

  Bouchabke O., Chang F., Simon M., Voisin R., Pelletier G., Durand-Tardif M. (2008)

  Natural variation in Arabidopsis thaliana as a tool for highlighting differential drought responses.

  PLoS ONE  3(2): e1705   Paper eLink

    

 

 

  Sicard O., Loudet O., Keurentjes J. J. B., Candresse T., Le Gall O., Revers F., Decroocq V. (2008)

  Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana.

  Molecular Plant-Microbe Interaction  21: 198-207

    

 

 

  Meng P.-H., Macquet A., Loudet O., Marion-Poll A., North H.M. (2008)

  Analysis of natural allelic variation controlling Arabidopsis thaliana seed germinability in response to cold and dark: identification of three major quantitative trait loci.

  Molecular Plant  1: 145-154

    

 

 

  Macquet A., Ralet M.-C., Loudet O., Kronenberger J., Mouille G., Marion-Poll A., North H.M. (2007)

  A naturally occurring mutation in an Arabidopsis accession affects a b-D-galactosidase that increases the hydrophilic potential of rhamnogalacturonan I in seed mucilage.

  The Plant Cell  19: 3990-4006

    

 

 

  Loudet O., Saliba-Colombani V., Camilleri C., Calenge F., Gaudon V., Koprivova A., North K.A., Kopriva S., Daniel-Vedele F. (2007)

  Natural variation for sulfate content in Arabidopsis is highly controlled by APR2.

  Nature Genetics  39: 896-900   Supp. Data

    

 

 

  Perchepied L., Kroj T., Tronchet M., Loudet O., Roby D. (2006)

  Natural variation in partial resistance to Pseudomonas syringae is controlled by two major QTLs in Arabidopsis thaliana.

  PLoS ONE  1(1): e123   Paper eLink

    

 

 

  Calenge F., Saliba-Colombani V., Mahieu S., Loudet O., Daniel-Vedele F., Krapp A. (2006)

  Natural variation for carbohydrate content in Arabidopsis thaliana: interaction with complex traits dissected by quantitative genetics.

  Plant Physiology  141: 1630-1643

    

 

 

  Kliebenstein D.J., West M.A.L., van Leeuwen H., Loudet O., Doerge R.W., St.Clair D.A. (2006)

  Identification of QTLs controlling gene expression networks defined a priori.

  BMC Bioinformatics  7: 308

    

 

 

  Barrière Y., Denoue D., Briand M., Simon M., Jouanin L., Durand-Tardif M. (2006)

  Genetic variations of cell wall digestibility related traits in floral stems of Arabidopsis thaliana accessions as a basis for the improvement of the feeding value in maize and forage plants.

  Theoretical and Applied Genetics  113: 163-75

    

 

 

  Mouille G., Witucka-Wall H., Bruyant M.P., Loudet O., Rihouey C., Lerouxel O., Lerouge P., Hofte H., Pauly M. (2006)

  QTL analysis of primary cell wall composition in Arabidopsis thaliana.

  Plant Physiology  141: 1035-1044

    

 

 

  Diaz C., Saliba-Colombani V., Loudet O., Belluomo P., Moreau L., Daniel-Vedele F., Morot-Gaudry J.-F., Masclaux-Daubresse C. (2006)

  Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana.

  Plant and Cell Physiology  47: 74-83

    

 

 

  Reymond M., Svistoonoff S., Loudet O., Nussaume L., Desnos T. (2006)

  Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana.

  Plant, Cell and Environment  29:115-125

    

 

 

  Loudet O., Gaudon V., Trubuil A., Daniel-Vedele F. (2005)

  Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family.

  Theoretical and Applied Genetics  110: 742-753

    

 

 

  Wolyn D., Borevitz J., Loudet O., Schwartz C., Maloof J., Ecker J., Berry C., Chory J. (2004)

  Light-response Quantitative Trait Loci identified with composite interval and eXtreme Array Mapping in Arabidopsis thaliana.

  Genetics  167: 907-917

    

 

 

  Loudet O., Chaillou S., Krapp A., Daniel-Vedele F. (2003)

  Quantitative Trait Loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana.

  Genetics  163: 711-722

    

 

 

  Loudet O., Chaillou S., Merigout P., Talbotec J., Daniel-Vedele F. (2003)

  Quantitative Trait Loci analysis of nitrogen use efficiency in Arabidopsis.

  Plant Physiology  131: 345-358

    

 

 

  Loudet O., Chaillou S., Camilleri C., Bouchez D., Daniel-Vedele F. (2002)

  Bay-0 x Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis.

  Theoretical and Applied Genetics  104: 1173-1184

    

 

 

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